bulkdeconv
An R package for estimating cell-type composition or abundance from human and mouse tumor bulk RNA-seq through one function.
Installation
install.packages(c("remotes", "BiocManager"))
remotes::install_github("DaikiKumakura/bulkdeconv", repos = BiocManager::repositories())See the package README for supported input scales and any method-specific dependencies.
Status
Check each method's species, input scale and interpretation. Some methods return abundance scores rather than proportions.