Daiki Kumakura

熊倉大騎

I am a mathematical biologist and a bioinformatics researcher in the pharmaceutical industry. I received my Ph.D. in Life Science from Hokkaido University in March 2025.

I study biological dynamics using mathematical models and data analysis, with an interest in pharmacometrics and systems biology.

Recent writing

Blog · 2026-11-06 · English

Co-clump proximity versus cellular communication: auditing CCI-seq

Public mouse-kidney metadata reproduces heterotypic Frequency scores while separating co-clump counts, cell pairs and random-label enrichment. Rare-pair denominators, replicate structure and recovered clump sizes define what proximity evidence can support.

Technical note · 2026-11-06 · English

What can public RNA-seq say about "reverting cancer cells to normal"?

A Japanese note re-reading a reported reversion of colorectal cancer cells after triple knockdown of three genes chosen by a Boolean network model, using the public RNA-seq data and a pre-fixed analysis plan. It checks whether the targets were expressed and knocked down, how specific the enterocyte program was, and how consistent the lines were. It does not evaluate the paper's other experiments or any therapy.

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