rsemflow: metadata-driven downstream analysis for RSEM

rsemflow imports RSEM *.genes.results files and ordinary sample metadata, then produces tabular downstream-analysis results: expression summaries, normalization, PCA, sample correlation, DESeq2 differential expression, preranked GSEA, GSVA/ssGSEA scores, and gene annotation.

Details

The same functions back the rsemflow command-line tool (see cli_main()). The package does not draw figures or write reports; every output is a tab-separated table for use in any downstream tool.

See also

Useful links:

• https://daikikumakura.github.io/rsemflow/

• https://github.com/DaikiKumakura/rsemflow

• Report bugs at https://github.com/DaikiKumakura/rsemflow/issues

Author

Maintainer: Daiki Kumakura 55353329+DaikiKumakura@users.noreply.github.com