Annotate genes from a GTF file

Reads the gene records of the GTF used to build the RSEM reference and returns gene_name, gene_type/gene_biotype, and description. IDs are matched on the full versioned ID first and on the stable Ensembl ID second.

Usage

annotate_gtf(study, gtf)

Arguments

study

A rsemflow_study or study path.

gtf

Path to a GTF or GTF.GZ file.

Value

A gene annotation data frame.