Install the packages a method needs into the private library

Installs the original method packages at the versions recorded in the registry (GitHub packages at a fixed commit) into a private library, so they do not touch your normal library. Interactively it asks before installing.

Usage

bulkdeconv_install(method, lib = NULL, ask = interactive())

Arguments

method

One or more method IDs, or "all" for every usable method.

lib

Library directory. Default: the first path of the option bulkdeconv.lib, else a per-user directory (see Details).

ask

Ask for confirmation first. Default: interactive().

Value

Invisibly, the library path used.

Details

The default library is tools::R_user_dir("bulkdeconv", "data") plus lib/R-<major.minor>. Set options(bulkdeconv.lib = "path") to use another place. The packages remotes and BiocManager are needed for the installation itself.

Examples

if (FALSE) { # \dontrun{
bulkdeconv_install("quantiseq")
bulkdeconv_install("all")
} # }